Insertion fees are pulled into the "insertion fee" column.
Other fees that are tied to specific items, such as bold upgrade, picture pack, etc, including Promoted listing fees will include in the Upgrade Fee column.
Fee credits and subscription fees are all after-the-fact, so they are not pulled in with the sales in the API.
You can manually put your Store Subscription fee in the Expense Tracking section, and after you verify that FVF has been credited back to your account, you can manually update that cell by selecting the cell and typing "0" and hit enter.
I hope that helps!